2022

T. Garcia-Garcia, T. Douché, Q. Giai Gianetto, S. Poncet, N. El Omrani, W. K. Smits, E. Cuenot, M. Matondo and I. Martin-Verstraete. In-depth characterization of the Clostridioides difficile phosphoproteome to identify Ser/Thr kinase substrates. Molecular and Cellular Proteomic, 2022,  in press, PMID: 36252736.

Zhang A, Lebrun R, Espinosa L, Galinier A, Pompeo F. PrkA is an ATP-dependent protease that regulates sporulation in Bacillus subtilis. J Biol Chem. 2022 Aug 28;298(10):102436. doi: 10.1016/j.jbc.2022.102436.

Vergnes A, Henry C, Grassini G, Loiseau L, El Hajj S, Denis Y, Galinier A, Vertommen D, Aussel L, Ezraty B. Periplasmic oxidized-protein repair during copper stress in E. coli: A focus on the metallochaperone CusF. PLoS Genet. 2022 Jul 11;18(7):e1010180. doi: 10.1371/journal.pgen.1010180.

Fyfe CD, Bernardo-García N, Fradale L, Grimaldi S, Guillot A, Brewee C, Chavas LMG, Legrand P, Benjdia A, Berteau O. Crystallographic snapshots of a B12-dependent radical SAM methyltransferase. Nature. 2022 Feb;602(7896):336-342 . doi: 10.1038/s41586-021-04355-9.

Soualmia F, Guillot A, Sabat N, Brewee C, Kubiak X, Haumann M, Guinchard X, Benjdia A, Berteau O. Exploring the Biosynthetic Potential of TsrM, a B12 -dependent Radical SAM Methyltransferase Catalyzing Non-radical Reactions. Chemistry. 2022 Jun 1;28(31):e202200627. doi: 10.1002/chem.202200627.

Loiseau, L., Vergnes, A., and Ezraty, B. (2022) Methionine oxidation under anaerobic conditions in Escherichia coli. Mol Microbiol 118: 387–402.

Ezzine C, Loison L, Montbrion N, Bôle-Feysot C, Déchelotte P, Coëffier M, Ribet D. (2022) Fatty acids produced by the gut microbiota dampen host inflammatory responses by modulating intestinal SUMOylation. Gut Microbes. doi: 10.1080/19490976.2022.2108280.

Oyama LB, Olleik H, Teixeira ACN, Guidini MM, Pickup JA, Hui BYP, Vidal N, Cookson AR, Vallin H, Wilkinson T, Bazzolli DMS, Richards J, Wootton M, Mikut R, Hilpert K, Maresca M, Perrier J, Hess M, Mantovani HC, Fernandez-Fuentes N, Creevey CJ, Huws SA. In silico identification of two peptides with antibacterial activity against multidrug-resistant Staphylococcus aureus. NPJ Biofilms Microbiomes. 2022 Jul 14;8(1):58. doi: 10.1038/s41522-022-00320-0.

Ahmad-Mansour, N.; Elhawy, M.I.; Huc-Brandt, S.; Youssouf, N.; Pätzold, L.; Martin, M.; Abdel-Wadood, N.; Aljohmani, A.; Morsli, M.; Krasteva-Christ, G.; Sören L. Becker, D. Yildiz , J.P. Lavigne, L. Gannoun-Zaki, M. Bischoff and V. Molle. Characterization of the Secreted Acid Phosphatase SapS Reveals a Novel Virulence Factor of Staphylococcus aureus That Contributes to Survival and Virulence in Mice. International Journal of Molecular Sciences 2022, 23, 14031, doi:10.3390/ijms232214031.

Vincent M, Ezraty B. (2022)  Methionine oxidation in bacteria: a reversible post-translational modification. Mol Microbiol. doi :10.1111/mmi.15000.

Legood S, Seng D, Boneca IG, Buddelmeijer N. A Defect in Lipoprotein Modification by Lgt Leads to Abnormal Morphology and Cell Death in Escherichia coli That Is Independent of Major Lipoprotein Lpp. J Bacteriol. 2022 Sep 20;204(9):e0016422. doi: 10.1128/jb.00164-22. Epub 2022 Aug 8. PMID: 35938851.

D’Angelo F., Fernandez-Fueyo E., Garcia P.S., Shomar H., Pelosse M., Manuel R.R., Büke F., Liu S., van den Broek N., Duraffourg N., de Ram C., Pabst E., Gribaldo S., Py B., Ollagnier de Choudens S., Barras F.* and Bokinsky G.* (2022) Cellular assays identify barriers impeding iron-sulfur enzyme activity in a non-native prokaryotic host. eLife 11:e70936.

Garcia P., D’Angelo F., Ollagnier de Choudens S., Dussouchaud M., Bouveret E., Gribaldo S* and Barras F*. (2022) An early origin of Iron-Sulfur cluster biosynthesis machineries before Earth oxygenation. Nature Eco. Evol. 6 :1564-1572. doi: 10.1038/s41559-022-01857-1.

Soltani S., Zirah S., Rebuffat S., Couture F., Boutin Y., Biron E., Subirade M. and Fliss I. (2022) Gastrointestinal stability and cytotoxicity of bacteriocins from Gram-positive and Gram-negative bacteria: a comparative in vitro study. Front. Microbiol. 12:780355. doi: 10.3389/fmicb.2021.780355.

Naimi S., Zirah S., Greppi A., Lacroix C., Rebuffat S. and Fliss I. Impact of microcin J25 on the porcine microbiome in a continuous culture model (2022) Front. Microbiol. 13:930392. doi: 10.3389/fmicb.2022.930392.

Telhig S., Ben Said L., Torres C., Rebuffat S., Zirah S. and  Fliss I. (2022) Evaluating the potential and the synergetic effects of microcins against multi-drug resistant Enterobacteriaceae. Microbiol. Spectr., 10:e0275221 oi: 10.1128/spectrum.02752-21.

Kawanabe-Matsuda H, Takeda K, Nakamura M, Makino S, Karasaki T, Kakimi K, Nishimukai M, Ohno T, Omi J, Kano K, Uwamizu A, Yagita H, Boneca IG, Eberl G, Aoki J, Smyth MJ, Okumura K. 2022. Dietary Lactobacillus-derived exopolysaccharide enhances immune checkpoint blockade therapy. Cancer Discov. 12(5):1336-1355.

Hosoda M, Aoki K, Guérardel Y, Yamada I, Aoki-Kinoshita KF. (2022) Meeting report on the international symposium on microbial Glycoconjugates and the GlySpace alliance: from micro to macro glycoscience (MiGGA symposium) Glycobiology. cwac062. doi: 10.1093/glycob/cwac062.

Wu D, Gilormini PA, Toda S, Biot C, Lion C, Guérardel Y, Sato C, Kitajima K. Glycopeptidolipid glycosylation controls surface properties and pathogenicity in Mycobacterium abscessus 2022 Cell Chem Biol May 19;29(5):910-924.e7. doi: 10.1016/j.chembiol.2022.03.008.

Daher W, Leclercq LD, Johansen MD, Hamela C, Karam J, Trivelli X, Nigou J, Guérardel Y, Kremer L. (2022) Glycopeptidolipid glycosylation controls surface properties and pathogenicity in Mycobacterium abscessus. Cell Chem Biol. 2022 May 19;29(5):910-924.e7. doi: 10.1016/j.chembiol.2022.03.008.

Yan S, Hodži? A, Bandini G, Yang G, Vanbeselaere J, Guérardel Y (2022) Editorial: Characterization, Biosynthesis and Biological Functions of Novel Glyco-Epitopes. Front Mol Biosci. Mar 4;9:871037. doi: 10.3389/fmolb.2022.871037.

Mery A, Jawhara S, François N, Cornu M, Poissy J, Martinez-Esparza M, Poulain D, Sendid B, Guérardel Y. (2022) Identification of fungal trehalose for the diagnosis of invasive candidiasis by mass spectrometry. Biochim Biophys Acta Gen Subj.; 1866(4):130083. doi: 10.1016/j.bbagen.2022.130083.

M.N. Sorin, A. Di Maio, L.M. Silva, D. Ebert, C. Delannoy, N.-K. Nguyen, Y. Guérardel, W. Chai, F. Halary, K. Renaudin-Autain, Y. Liu, C. Bressollette-Bodin, T. Stehle, D. McIlroy (2022) Structural and functional analysis of natural capsid variants reveals sialic-acid independent entry of BK polyomavirus. bioRxiv, doi: 10.1101/2022.07.13.499703.

Nagarajan SN, Lenoir C & Grangeasse C. Recent advances in bacterial signaling by serine/threonine protein kinases. 2022, Trends Microbiol. 6, 553-566. doi: 10.1016/j.tim.2021.11.005.

Diagne AM, Pelletier A, Durmort C, Faure A, Kanonenberg K, Freton C, Page A, Delolme F, Vorac J, Vallet S, Bellard L, Vives C, Fieschi F, Vernet T, Rousselle, Guiral S, Grangeasse C, Jault JM & Orelle C. Identification of a two-component regulatory system involved in antimicrobial peptide resistance in Streptococcus pneumoniae. 2022, PLoS Pathog. 18, e1010458. doi: 10.1371/journal.ppat.1010458.

Lartigue C, Lambert B, Rideau F, Dahan Y, Decossas M, Hillion M, Douliez JP, Hardouin J, Lambert O, Blanchard A, Béven L. Cytoskeletal components can turn wall-less spherical bacteria into kinking helices. Nat Commun. 2022, 13(1): 6930. doi: 10.1038/s41467-022-34478-0.

Zhang A, Lebrun R, Espinosa L, Galinier A., Pompeo F. PrkA is an ATP-dependent protease that regulates sporulation in Bacillus subtilis. J. Biol. Chem. (2022) 298(10) 102436.
Nikolopoulos N, Matos RC, Courtin P, Ayala I, Akherraz H, Simorre JP, Chapot-Chartier MP, Leulier F, Ravaud S, Grangeasse C. (2022) DltC acts as an interaction hub for AcpS, DltA and DltB in the teichoic acid D-alanylation pathway of Lactiplantibacillus plantarum. Sci Rep. 12(1):13133. doi: 10.1038/s41598-022-17434-2.

Nikolopoulos N., Matos RC, Ravaud S, Courtin P, Akherraz H, Palussière S, Gueguen-Chaignon V, Salomon-Mallet M, Guillot A, Guérardel Y, Chapot-Chartier MP, Grangeasse C, Leulier F (2022) Structure-Function analysis of Lactiplantibacillus plantarum DltE reveals D-alanylated lipoteichoic acids as direct symbiotic cues supporting Drosophila juvenile growth bioRxiv, 2022.09.14.507969; doi: 10.1101/2022.09.14.507969.

2021

Mateos-Hernández L, Pipová N, Allain E, Henry C, Rouxel C, Lagrée AC, Boulouis HJ, Valdés JJ, Alberdi P, de la Fuente J, Cabezas-Cruz A, Šimo L. (2021) Enlisting the Ixodes scapularis Embryonic ISE6 Cell Line to Investigate the Neuronal Basis of Tick—Pathogen Interactions. Pathogens, 1 (10) 70.

Prola A, Blondelle J, Vandestienne A, Piquereau J, Denis RGP, Guyot S, Chauvin H, Mourier A, Maurer M, Henry C, Khadhraoui N, Gallerne C, Molinié T, Courtin G, Guillaud L, Gressette M, Solgadi A, Dumont F, Castel J, Ternacle J, Demarquoy J, Malgoyre A, Koulmann N, Derumeaux G, Giraud MF, Joubert F, Veksler V, Luquet S, Relaix F, Tiret L, Pilot-Storck F. (2021) Cardiolipin content controls mitochondrial coupling and energetic efficiency in muscle. Science Advances, 1 (7) eabd6322.

Alpha-Bazin B, Gorlas A, Lagorce A, Joulié D, Boyer JB, Dutertre M, Gaillard JC, Lopes A, Zivanovic Y, Dedieu A, Confalonieri F, Armengaud J. (2021) Lysine-specific acetylated proteome from the archaeon Thermococcus gammatolerans reveals the presence of acetylated histones. J Proteomics, 2021 232:104044. DOI: 10.1016/j.jprot.2020.104044.

Nozeret K, Pernin A, Buddelmeijer N. (2020) Click-Chemistry Based Fluorometric Assay for Apolipoprotein N-acyltransferase from Enzyme Characterization to High-Throughput Screening. J Vis Exp. May 13;(159). doi: 10.3791/61146. PMID: 32478756.

Legood S., Ivo G. Boneca, Buddelmeijer N. (2020) Mode of action of lipoprotein modification enzymes-Novel antibacterial targets. Mol Microbiol. Sep 26. doi: 10.1111/mmi.14610 PMID: 32979868.

Hamitouche F, Armengaud J, Dedieu L, Duport C. Cysteine Proteome reveals response to endogenous oxidative stress in Bacillus cereus. Int. J. Mol. Sci. 2021,22, ?7550. https://doi.org/10.3390/ijms22147550. .

Hamitouche F, Gaillard JC, Schmitt P, Armengaud J, Dedieu L, Duport C. Redox proteomic study of Bacillus cereus thiol proteome during fermentative anaerobic growth. BMC Genomics 22, 648 (2021).  ?https://doi.org/10.1186/s12864-021-07962-y.

T. Garcia-Garcia, S. Poncet, E. Cuenot, T. Douché, Q Giai Gianetto, J Peltier, P. Courtin, M-P Chapot-Chartier, M. Matondo, B Dupuy, T Candela and I. Martin-Verstraete. Ser/Thr kinase-dependent phosphorylation of the peptidoglycan hydrolase CwlA controls its export and modulates cell division in Clostridioides difficile. mBio. 2021. 12(3):e00519-21. doi: 10.1128/mBio.00519-21 PMID: 34006648.

Bouvenot., T., Dewitte, A., Bennaceur, N., Pradel, E., Bontemps-Gallo, S. Sebbane, F. Interplay between Yersinia pestis and its flea vector in lipoate metabolism. ISME J. 2021, Apr;15(4):1136-1149. doi: 10.1038/s41396-020-00839-0.

Zhang A, Pompeo F, Galinier A. Overview of protein phosphorylation in bacteria with a main focus on unusual protein kinases in Bacillus subtilis. Res Microbiol. 2021 Nov-Dec;172(7-8):103871. doi: 10.1016/j.resmic.2021.103871.

Benjdia A, Berteau O. Radical SAM Enzymes and Ribosomally-Synthesized and Post-translationally Modified Peptides: A Growing Importance in the Microbiomes. Front Chem. 2021 Jul 19;9:678068. doi: 10.3389/fchem.2021.678068.

Popp PF, Friebel L, Benjdia A, Guillot A, Berteau O, Mascher T. The Epipeptide Biosynthesis Locus epeXEPAB Is Widely Distributed in Firmicutes and Triggers Intrinsic Cell Envelope Stress. Microb Physiol. 2021;31(3):306-318. doi: 10.1159/000516750.

Youssouf, N.; Recasens-Zorzo, C.; Molle, V.; Bossis, G.; Soubeyran, P.; Gannoun-Zaki, L. Staphylococcus aureus Decreases SUMOylation Host Response to Promote Intramacrophage Survival. International Journal of Molecular Sciences 2021, 22, 8108, doi:10.3390/ijms22158108.

Elhawy, M.I.; Molle, V.; Becker, S.L.; Bischoff, M. The Low-Molecular Weight Protein Arginine Phosphatase PtpB Affects Nuclease Production, Cell Wall Integrity, and Uptake Rates of Staphylococcus aureus by Polymorphonuclear Leukocytes. International Journal of Molecular Sciences 2021, 22, 5342, doi:10.3390/ijms22105342.

Elhawy, M.I.; Huc-Brandt, S.; Pätzold, L.; Gannoun-Zaki, L.; Abdrabou, A.M.M.; Bischoff, M.; Molle, V. The Phosphoarginine Phosphatase PtpB from Staphylococcus aureus Is Involved in Bacterial Stress Adaptation during Infection. Cells 2021, 10, 645, doi:10.3390/cells10030645.

Roblin C, Chiumento S, Jacqueline C, Pinloche E, Nicoletti C, Olleik H, Courvoisier-Dezord E, Amouric A, Basset C, Dru L, Ollivier M, Bogey-Lambert A, Vidal N, Atta M, Maresca M, Devillard E, Duarte V, Perrier J, Lafond M,The Multifunctional Sactipeptide Ruminococcin C1 Displays Potent Antibacterial Activity In Vivo as Well as Other Beneficial Properties for Human Health. Int J Mol Sci. 2021 Mar 23;22(6):3253. doi: 10.3390/ijms22063253.

Labarre C, Dautin N, Grzegorzewicz A, Jackson M, McNeil M, Mohiman N, Sago L, Bayan N. S16 and T18 mannosylation sites of LppX are not essential for its activity in phthiocerol dimycocerosates localization at the surface of Mycobacterium tuberculosis. Res Microbiol. 2021 Nov-Dec;172(7-8):103874. doi: 10.1016/j.resmic.2021.103874. Epub 2021 Sep 4. PMID: 34492336.

Lisboa J, C Pereira, A Rifflet, J Ayala, M Terceti, A Barca, I Rodrigues, P Pereira, C Osorio, F García-del Portillo, IG Boneca, A do Vale, N dos Santos. 2021. A secreted NlpC/P60 endopeptidase from Photobacterium damselae subsp. Piscicida cleaves the peptidoglycan of potentially competing bacteria. mSphere. 6(1):e00736-20.

Tian X, G Manat, E Gasiorowski, R Auger, S Hicham, D Mengin-Lecreulx, IG Boneca, T Touzé. 2021. LpxT-dependent phosphorylation of Lipid A in Escherichia coli increases resistance to deoxycholate and enhances gut colonization. Front Microbiol. 12:676596.

Esquilin-Lebron K., Dubrac S., Barras F.* and J. Boyd* (2021). Bacterial approaches for assembling Iron-sulfur proteins. mBio 12(6):e0242521. doi: 10.1128.

Tseng HC, Hsiao CT, Yamakawa N, Guérardel Y, Khoo KH. Discovery Sulfoglycomics and Identification of the Characteristic Fragment Ions for High-Sensitivity Precise Mapping of Adult Zebrafish Brain-Specific Glycotopes. Front Mol Biosci. 2021 Dec 20;8:771447. doi: 10.3389/fmolb.2021.771447. PMID: 34988116; PMCID: PMC8721812.

Sivignon A, Yu SY, Ballet N, Vandekerckove P, Barnich N, Guérardel Y. Heteropolysaccharides from S. cerevisiae show anti-adhesive properties against E. coli associated with Crohn’s disease. Carbohydr Polym. 2021 Nov 1;271:118415. doi: 10.1016/j.carbpol.2021.118415. Epub 2021 Jul 8. PMID: 34364556.

Chapot-Chartier MP, Buddelmeijer N. Post-translational modifications in bacteria – The dynamics of bacterial physiology. Res Microbiol. 2021 Nov-Dec;172(7-8):103887. doi: 10.1016/j.resmic.2021.103887.

Jeanne Dit Fouque K., Scutelnic V., Hegemann J.D., Rebuffat S., Maître P., Rizzo T.R., Fernandez-Lima F. (2021) Structural insights from tandem mass spectrometry, ion mobility-mass spectrometry, and infrared/ultraviolet spectroscopy on Sphingonodin I: lasso vs. branched-cyclic topoisomers. J Am Soc Mass Spectrom. 32:1096-1104. doi: 10.1021/jasms.1c00041.

Montalbán-López M., Scott T.A., Ramesh S., Rahman I.R, van Heel A., Viel J.H., Bandarian V., Breukink E., Dittmann E., Genilloud O., Goto Y., Grande Burgos M.J., Hill C., Kim S., Koehnke J., Latham J., Link J.T., Martínez B., Nair S.K., Nicolet Y., Rebuffat S., Sahl H.G., Sareen D., Schmidt E.W., Schmitt L., Severinov K., Süssmuth R.D., Truman A., Wang H., Weng J.K., van Wezel G.P., Zhang Q., Zhong j., Piel J., Mitchell D.A., Kuipers O.P. and van der Donk W.A. (2021) New developments in RiPP discovery, enzymology and engineering. Nat. Prod. Rep. 38:130-239. doi: 10.1039/d0np00027b.

Garcion C., Béven L., Foissac X. (2021) Comparison of current methods of signal peptide prediction in phytoplasmas. Front. Microbiol. 12: 661524. doi: 10.3389/fmicb.2021.661524.

Duport C, Madeira JP, Farjad M, Alpha-Bazin B, Armengaud J. Methionine Sulfoxide Reductases Contribute to Anaerobic Fermentative Metabolism in Bacillus cereus. Antioxidants (Basel). 2021, 10, 819. doi: 10.3390/antiox10050819.

Trouve J, Zapun A, Arthaud C, Durmort C, Di Guilmi AM, Söderström B, Pelletier A, Grangeasse C, Bourgeois D, Wong YS, Morlot C (2021). Nanoscale dynamics of peptidoglycan assembly during the cell cycle of Streptococcus pneumoniae. Curr. Biol. 31(13):2844-2856.e6.

Delisle J, Cordier B, Audebert S, Pophillat M, Cluzel C, Espinosa L, Grangeasse C, Galinier A, Doan T. (2021) Characterization of TseB: A new actor in cell wall elongation in Bacillus subtilis Mol Microbiol. Oct;116(4):1099-1112.

2020

Williams AH, R Wheeler, A-E Deghmane, I Santecchia, RE Schaub, S Hicham, M Moya Nilges, C Malosse, J Chamot-Rooke, A Haouz, JP Dillard, WP Robins, M-K Taha, IG Boneca. 2020. Defective lytic transglycosylase disrupts cell morphogenesis by hindering cell wall de-O-acetylation in N. meningitidis. eLife. 51247.

Scornec H, A Palud, T Pedron, R Wheeler, C Petitgonnet, IG Boneca, J-F Cavin, PJ Sansonetti, H Licandro. 2020. Study of the cwaRS-ldcA operon coding a two-component system and a putative L,D-carboxypeptidase in Lactobacillus paracasei. Frontiers Microbiol. 11:156.

Coullon H, A Rifflet, R Wheeler, C Janoir, IG Boneca, T Candela. 2020. Peptidoglycan analysis reveals that synergistic deacetylase activity in vegetative Clostridium difficile impacts the host response. J Biol Chem. 295(49):16785-16796. .

El Mortaji L, A Tejada-Arranz, A Rifflet, IG Boneca, G Péhau-Arnaudet, JP Radicella, S Marsin, H De Reuse. 2020. A peptide of a type I toxin-antitoxin system induces Helicobacter pylori morphological transformation from spiral-shape to coccoids. Proc Natl Acad Sci U S A. 117(49):31398-31409.

Somrit, M.; Yu, S.-Y.; Le Pendu, J.; Breiman, A.; Guérardel, Y.; Weerachatyanukul, W.; Watthammawut, A. Macrobrachium Rosenbergii Nodavirus Virus-like Particles Attach to Fucosylated Glycans in the Gills of the Giant Freshwater Prawn. Cell. Microbiol. 2020, 22 (12), e13258. .

Daher, W.; Leclercq, L.-D.; Viljoen, A.; Karam, J.; Dufrêne, Y. F.; Guérardel, Y.; Kremer, L. O-Methylation of the Gycopeptidolipid Acyl Chain Defines Surface Hydrophobicity of Mycobacterium abscessus and Macrophage Invasion. ACS Infect Dis 2020 6(10):2756-2770.

de Ruyck, J.; Dupont, C.; Lamy, E.; Le Moigne, V.; Biot, C.; Guérardel, Y.; Herrmann, J.-L.; Blaise, M.; Grassin-Delyle, S.; Kremer, L.; Dubar, F. Structure-Based Design and Synthesis of Piperidinol-Containing Molecules as New Mycobacterium Abscessus Inhibitors. ChemistryOpen 2020, 9 (3), 351–365. .

Dubois, T.; Krzewinski, F.; Yamakawa, N.; Lemy, C.; Hamiot, A.; Brunet, L.; Lacoste, A.-S.; Knirel, Y.; Guérardel, Y.; Faille, C. The Sps Genes Encode an Original Legionaminic Acid Pathway Required for Crust Assembly in Bacillus Subtilis. mBio 2020, 11 (4). .

Guérardel, Y.; Sadovskaya, I.; Maes, E.; Furlan, S.; Chapot-Chartier, M.-P.; Mesnage, S.; Rigottier-Gois, L.; Serror, P. Complete Structure of the Enterococcal Polysaccharide Antigen (EPA) of Vancomycin-Resistant Enterococcus Faecalis V583 Reveals That EPA Decorations Are Teichoic Acids Covalently Linked to a Rhamnopolysaccharide Backbone. mBio 2020, 11 (2). .

Delannoy, C.; Huang, C.; Coddeville, B.; Chen, J.-Y.; Mouajjah, D.; Groux-Degroote, S.; Harduin-Lepers, A.; Khoo, K.-H.; Guérardel, Y.; Elass-Rochard, E. Mycobacterium Bovis BCG Infection Alters the Macrophage N-Glycome. Mol. Omics 2020. .

Durmort, C.; Ercoli, G.; Ramos-Sevillano, E.; Chimalapati, S.; Haigh, R. D.; De Ste Croix, M.; Gould, K.; Hinds, J.; Guérardel, Y.; Vernet, T.; Oggioni, M.; Brown, J. S. Deletion of the Zinc Transporter Lipoprotein AdcAII Causes Hyperencapsulation of Streptococcus Pneumoniae Associated with Distinct Alleles of the Type I Restriction-Modification System. mBio 2020, 11 (2). .

Shen, L.; Viljoen, A.; Villaume, S.; Joe, M.; Halloum, I.; Chêne, L.; Méry, A.; Fabre, E.; Takegawa, K.; Lowary, T. L.; Vincent, S. P.; Kremer, L.; Guérardel, Y.; Mariller, C. The Endogenous Galactofuranosidase GlfH1 Hydrolyzes Mycobacterial Arabinogalactan. J. Biol. Chem. 2020, 295 (15), 5110–5123.

Dautin N, Argentini M, Mohiman N, Labarre C, Cornu D, Sago L, Chami M, Dietrich C, de Sousa d’Auria C, Houssin C, Masi M, Salmeron C, Bayan N. Role of the unique, non-essential phosphatidylglycerol::prolipoprotein diacylglyceryltransferase (Lgt) in Corynebacterium glutamicum. (2020) Microbiology Aug;166(8):759-776. .

Le, N.-H., Locard-Paulet, M., Stella, A., Tomas, N., Molle, V., Burlet-Schiltz, O., Daffé, M., and Marrakchi, H. (2020) The protein kinase PknB negatively regulates biosynthesis and trafficking of mycolic acids in mycobacteria. J Lipid Res. 61, 1180–1191.

Martinez, E., Huc-Brandt, S., Brelle, S., Allombert, J., Cantet, F., Gannoun-Zaki, L., Burette, M., Martin, M., Letourneur, F., Bonazzi, M., and Molle, V. (2020) The secreted protein kinase CstK from Coxiella burnetii influences vacuole development and interacts with the GTPase-activating host protein TBC1D5. J. Biol. Chem. 295, 7391–7403.

Singhal, A., Virmani, R., Naz, S., Arora, G., Gaur, M., Kundu, P., Sajid, A., Misra, R., Dabla, A., Kumar, S., Nellissery, J., Molle, V., Gerth, U., Swaroop, A., Sharma, K., Nandicoori, V. K., and Singh, Y. (2020) Methylation of two-component response regulator MtrA in mycobacteria negatively modulates its DNA binding and transcriptional activation. Biochemical Journal. 477, 4473–4489.

Roumezi B., Avilan L, Risoul V., Brugna M., Rabouille S. and A. Latifi (2020)  Overproduction of the Flv3B Flavodiiron, Enhances the Photobiological Hydrogen Production by the Nitrogen-Fixing Cyanobacterium Nostoc PCC 7120. Micron Cell Fact   10;19(1):65.

Roumezi B., Xu X., Risoul V., Fan Y., Lebrun R. and A. Latifi (2020) The Pkn22 Kinase of Nostoc PCC 7120 Is Required for Cell Differentiation via the Phosphorylation of HetR on aResidue Highly Conserved in Genomes of Heterocyst-Forming Cyanobacteria. Front Microbiol. 21;10:3140.

Xu X., Risoul V., Byrne D., Champ S., Douzi B. and A. Latifi (2020) HetL, HetR and PatS form a reaction-diffusion system to control pattern formation in the cyanobacterium nostoc PCC 7120. Elife.7;9:e59190 .

Rachedi R., Foglino M. and A. Latifi (2020) Stress Signaling in Cyanobacteria: A Mechanistic Overview. Life 10(12):312.

Martínez B, Rodríguez A, Kulakauskas S, Chapot-Chartier MP. Cell wall homeostasis in lactic acid bacteria: threats and defences. (2020) FEMS Microbiol Rev. 44, 538-564.

Mahony J, Frantzen C, Vinogradov E, Sadovskaya I, Theodorou I, Kelleher P, Chapot-Chartier MP, Cambillau C, Holo H, van Sinderen D. The CWPS Rubik’s cube: Linking diversity of cell wall polysaccharide structures with the encoded biosynthetic machinery of selected Lactococcus lactis strains. (2020) Mol Microbiol. 114, 582-596.  .

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Doughty TW, Domenzain I, Millan-Oropeza A, Montini N, Groot PA, Pereira R, Nielsen J, Henry C, Daran JMG, Siewers V, Morrissey JP. (2020) Stress-induced expression is enriched for evolutionarily young genes in diverse budding yeasts. Nat Commun, 1 (11) 1-9.

Huang CY, Gonzalez-Lopez C, Henry C, Mijakovic I, Ryan KR. (2020) hipBA toxin-antitoxin systems mediate persistence in Caulobacter crescentus. Sci Rep, 1 (10) 1-15.

Lingeswaran A, Metton C, Henry C, Monnet V, Juillard V, Gardan R. (2020) Export of Rgg Quorum Sensing Peptides is Mediated by the PptAB ABC Transporter in Streptococcus Thermophilus Strain LMD-9. Genes, 9 (11) 1096.

Lonjon F, Rengel D, Roux F, Henry C, Turner M, Le Ru A, Razavi N, Sabbagh CRR, Genin S, Vailleau F. (2020) HpaP Sequesters HrpJ, an Essential Component of Ralstonia solanacearum Virulence That Triggers Necrosis in Arabidopsis. Mol. Plant Microbe Interact., 2 (33) 200-211.

Millan-Oropeza A, Henry C, Lejeune C, David M, Virolle MJ. (2020) Expression of genes of the Pho regulon is altered in Streptomyces coelicolor. Scientific Reports, 1 (10) 8492.

Nef C, Henry C, Nicolau Élodie, Bérard JB, Hervé F, Caruana AMN, Kaas R, Mairet F, Garnier M. (2020) Cobalamin Scarcity Modifies Carbon Allocation and Impairs DMSP Production Through Methionine Metabolism in the Haptophyte Microalgae Tisochrysis lutea. Front. Mar. Sci., (7).

Ryskaliyeva A, Krupova Z, Henry C, Faye B, Konuspayeva G, Martin P. (2020) Comprehensive proteomic analysis of camel milk-derived extracellular vesicles. International Journal of Biology and Chemistry, 2 (12) 93-104.

Cazalé AC, Blanquet P, Henry C, Pouzet C, Bruand C, Meilhoc E. (2020) Tyrosine nitration of flagellins: a response of Sinorhizobium meliloti to nitrosative stress. Appl. Environ. Microbiol., ().

Ryskalieva A, Krupova Z, Henry C, Faye B, Konuspayeva GS, Martin P. (2020) Fundamental studies of milk exosomes Camelus dromedarius, Camelus bactrianus and hybrids from Kazakhstan. Experimental Biology, 3 (84).

Ben Ali W, Navarro D, Kumar A, Drula E, Turbé-Doan A, Correia Oliveira L, Baumberger S, Bertrand E, Faulds CB, Henrissat B, Sciara G, Mechichi T, Record E. (2020) Characterization of the CAZy Repertoire from the Marine-Derived Fungus Stemphylium lucomagnoense in Relation to Saline Conditions. Marine Drugs, 9 (18) 461.

Sauvage S, Hardouin J. (2020) Exoproteomics for Better Understanding Pseudomonas aeruginosa Virulence. Toxins 12(9): 571.

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Dian,  C., Pérez-Dorado, I., Rivière, F., Asensio, T., Legrand, P., Ritzefeld, M.,  Shen, M., Cota,  E., Meinnel, T., Tate, E.W. & Giglione, C. High-resolution snapshots of human N-myristoyltransferase in action illuminate a unique mechanism promoting both N-terminal Lys and Gly myristoylation, (2020) Nature Communications 11(1):1132.

Ambruster, L., Linster, E., Boyer, J.B., Brünje, A., Eirich, J., Stephan, I., Bienvenut, W.V., Weidenhausen, J., Meinnel, T., Hell, R., Sinning, I., Finkemeier, I., Giglione, C., & Wirtz, M. (2020)  NAA50 is an enzymatically active N-alpha-acetyltransferase that is crucial for the development and regulation of stress responses. Plant Physiol. 183(4):1502-1516.

Giglione, C., Dian C., Meinnel T., Myristoylation, an ancient protein modification mirroring eukaryogenesis and evolution, Trends in Plant Sci. (2020) 45(7):619-632.

Meinnel, T. and Giglione, C. Evolution-driven versatility of N-terminal acetylation in photoautotrophs. Trends in Plant Sci. (2020) S1360-1385(20)30357-5.

Bolotin A, Quinquis B, Roume H, Gohar M, Lereclus D, Sorokin A. 2020. Long inverted repeats around the chromosome replication terminus in the model strain Bacillus thuringiensis serovar israelensis BGSC 4Q7. Microb Genom 6.

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Massier S, Robin B, Mégroz M, Wright A, Harper M, Hayes B, Cosette P, Broutin I, Boyce JD, Dé E, Hardouin J. Phosphorylation of Extracellular Proteins in Acinetobacter baumannii in Sessile Mode of Growth. Front Microbiol. 2021, 12: 738780. doi: 10.3389/fmicb.2021.738780. eCollection 2021.

Nozeret K., Pernin A., Buddelmeijer N. Click-Chemistry Based Fluorometric Assay for Apolipoprotein N-acyltransferase from Enzyme Characterization to High-Throughput Screening. 2020 J Vis Exp. 2020 May 13;(159). doi: 10.3791/61146. PMID: 32478756.

Legood S., Boneca I.G., Buddelmeijer N. Mode of action of lipoprotein modification enzymes-Novel antibacterial targets. Mol Microbiol. 2020 Mar;115(3):356-365.doi: 10.1111/mmi.14610. .

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Guérardel Y, Sadovskaya I, Maes E, Furlan S, Chapot-Chartier MP, Mesnage S, Rigottier-Gois L, Serror P. (2020) Complete Structure of the Enterococcal Polysaccharide Antigen (EPA) of Vancomycin-Resistant Enterococcus faecalis V583 Reveals that EPA Decorations Are Teichoic Acids Covalently Linked to a Rhamnopolysaccharide Backbone. mBio. 11(2):e00277-20. doi: 10.1128/mBio.00277-20.

Hosek T, Bougault CM, Lavergne JP, Martinez D, Ayala, I, Fenel D, Restelli M, Morlot C, Habenstein B, Grangeasse C*, Simorre JP*. Structural features of the interaction of MapZ with FtsZ and membranes in Streptococcus pneumoniae. (2020) Scientific Reports, 10, 4051. *Co-last authors.

2019

Pigeyre, L.; Schatz, M.; Ravallec, M.; Gasmi, L.; Nègre, N.; Clouet, C.; Seveno, M.; El Koulali, K.; Decourcelle, M.; Guérardel, Y.; Cot, D.; Dupressoir, T.; Gosselin-Grenet, A.-S.; Ogliastro, M. Interaction of a Densovirus with Glycans of the Peritrophic Matrix Mediates Oral Infection of the Lepidopteran Pest Spodoptera Frugiperda. Viruses 2019, 11 (9).

Sadovskaya, I.; Guérardel, Y. Simple Protocol to Purify Cell Wall Polysaccharide from Gram-Positive Bacteria and Assess Its Structural Integrity. Methods Mol. Biol. Clifton NJ 2019, 1954, 37–45. .

Cornu, M.; Sendid, B.; Mery, A.; François, N.; Mikulska, M.; Letscher-Bru, V.; De Carolis, E.; Damonti, L.; Titecat, M.; Bochud, P.-Y.; Alanio, A.; Sanguinetti, M.; Viscoli, C.; Herbrecht, R.; Guérardel, Y.; Poulain, D. Evaluation of Mass Spectrometry-Based Detection of Panfungal Serum Disaccharide for Diagnosis of Invasive Fungal Infections: Results from a Collaborative Study Involving Six European Clinical Centers. J. Clin. Microbiol. 2019, 57 (5). .

Maes, E.; Sadovskaya, I.; Lévêque, M.; Elass-Rochard, E.; Payré, B.; Grard, T.; Théodorou, V.; Guérardel, Y.; Mercier-Bonin, M. Structure and Biological Activities of a Hexosamine-Rich Cell Wall Polysaccharide Isolated from the Probiotic Lactobacillus Farciminis. Glycoconj. J. 2019. https://doi.org/10.1007/s10719-018-09854-y.

F Migliardo, Y Bourdreux, M Buchotte, G Doisneau, JM Beau, N Bayan. Study of the conformational behaviour of trehalose mycolates by FT-IR spectroscopy (2019) Chemistry and physics of lipids 223, 104789.

Lesur E, Baron A, Dietrich C, Buchotte M, Doisneau G, Urban D, Beau JM, Bayan N, Vauzeilles B, Guianvarc’h D, Bourdreux Y. First access to a mycolic acid-based bioorthogonal reporter for the study of the mycomembrane and mycoloyltransferases in Corynebacteria. (2019) Chem Commun (Camb) Oct 29;55(87):13074-13077.

E. Cuenot, T. Garcia-Garcia, T Douche, O. Gorgette, P. Courtin, S. Denis-Quanquin, S Hoys, Y. Tremblay, M. Matondo, M-P Chapot-Chartier, C. Janoir, B. Dupuy, T. Candela and I. Martin-Verstraete. 2019. The Ser/Thr kinase PrkC participates in cell wall homeostasis and antimicrobial resistance in Clostridium difficile. (2019). Infect Immun. 87(8):e00005-19. doi: 10.1128.

Pelletier A, Freton C, Gallay C, Trouve J, Cluzel C, Franz-Wachtel M, Macek B, Jault JM, Grangeasse C*, Guiral S*. The tyrosine-autokinase UbK is required for proper cell growth and cell morphology of streptococcus pneumoniae. (2019) Frontiers in Microbiology, 10, 1942. *Co-last authors.

Macek B, Forchhammer K, Hardouin J, Weber-Ban E, Grangeasse C, Mijakovic I. Post-translational modifications in bacteria. (2019), Nature Reviews Microbiology, 17, 651-664. *Co-last authors.

Guiseppi, A., Vicente, J. J., Herrou, J., Byrne, D., Barneoud, A., Moine, A., Espinosa, L., Basse, M.-J., Molle, V., Mignot, T., Roche, P., and Mauriello, E. M. F. (2019) A divergent CheW confers plasticity to nucleoid-associated chemosensory arrays. PLOS Genetics. 15, e1008533.

Virmani, R., Sajid, A., Singhal, A., Gaur, M., Joshi, J., Bothra, A., Garg, R., Misra, R., Singh, V. P., Molle, V., Goel, A. K., Singh, A., Kalia, V. C., Lee, J.-K., Hasija, Y., Arora, G., and Singh, Y. (2019) The Ser/Thr protein kinase PrkC imprints phenotypic memory in Bacillus anthracis spores by phosphorylating the glycolytic enzyme enolase. J Biol Chem. 294, 8930–8941.

Latifi A, Avilan L, Brugna, M (2019) Clostridial whole cell and enzyme systems for hydrogen production: current state and perspectives. Appl Microbiol Biotechnol 103(2):567-57.

Duchêne MC, Rolain T, Knoops A, Courtin P, Chapot-Chartier MP, Dufrêne YF, Hallet BF, Hols P. Distinct and Specific Role of NlpC/P60 Endopeptidases LytA and LytB in Cell Elongation and Division of Lactobacillus plantarum. (2019) Front Microbiol,10, 713. .

Solopova A, van Tilburg AY, Foito A, Allwood JW, Stewart D, Kulakauskas S, Kuipers OP. Engineering Lactococcus lactis for the production of unusual anthocyanins using tea as substrate. (2019) Metab Eng, 54, 160-169.

Theodorou I, Courtin P, Palussière S, Kulakauskas S, Bidnenko E, Péchoux C, Fenaille F, Penno C, Mahony J, van Sinderen D, Chapot-Chartier MP. A dual-chain assembly pathway generates the high structural diversity of cell-wall polysaccharides in Lactococcus lactis. (2019) J Biol Chem, 294,17612-17625.

Balty C, Guillot A, Fradale L, Brewee C, Boulay M, Kubiak X, Benjdia A, Berteau O. Ruminococcin C, an anti-clostridial sactipeptide produced by a prominent member of the human microbiota Ruminococcus gnavus. (2019) J Biol Chem. ;294(40):14512-14525.

Jeanne Dit Fouque K, Bisram V, Hegemann JD, Zirah S, Rebuffat S, Fernandez-Lima F. Structural signatures of the class III lasso peptide BI-32169 and the branched-cyclic topoisomers using trapped ion mobility spectrometry – mass spectrometry and tandem mass spectrometry. (2019) Anal Bioanal Chem. 411,6287-6296.

Jeanne Dit Fouque K, Hegemann JD, Zirah S, Rebuffat S, Lescop E, Fernandez-Lima F. Evidence of cis/trans-isomerization at Pro7/Pro16 in the lasso peptide microcin J25. (2019) J Am Soc Mass Spectrom. 30,1038-1045.

Jollard C ,  Foissac X, Desque D, Razan F, Garcion C, Béven L, Eveillard S. Flavescence Dorée phytoplasma has multiple ftsH genes that are differentially expressed in plants and insects. (2020) International Journal of Molecular Sciences, 21(1):150.

Auger S, Henry C, Péchaux C, Lejal N, Zanet V, Nikolic MV, Manzano M, Vidic J. (2019) Exploring the impact of Mg-doped ZnO nanoparticles on a model soil microorganism Bacillus subtilis. Ecotoxicol. Environ. Saf., (182) 109421.

Doughty TW, Domenzain I, Millan-Oropeza A, Montini N, Groot PA, Pereira R, Nielsen J, Henry C, Daran JMG, Siewers V, Morrissey JP. (2019) Young Genes are More Responsive to Environmental Stress than Ancient Genes in Budding Yeasts. bioRxiv, () 660274.

Henry C, Haller L, Blein-Nicolas M, Zivy M, Canette A, Verbrugghe M, Mézange C, Boulay M, Gardan R, Samson S, Martin V, André-Leroux G, Monnet V. (2019) Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus Phosphoproteome. Front Microbiol, (10) 1329.

Kénanian G, Morvan C, Weckel A, Pathania A, Anba-Mondoloni J, Halpern D, Gaillard M, Solgadi A, Dupont L, Henry C, Poyart C, Fouet A, Lamberet G, Gloux K, Gruss A. (2019) Permissive Fatty Acid Incorporation Promotes Staphylococcal Adaptation to FASII Antibiotics in Host Environments. Cell Reports, 12 (29) 3974-3982.e4.

Prola A, Blondelle J, Vandestienne A, Piquereau J, Denis RGP, Guyot S, Chauvin H, Mourier A, Letheule M, Maurer M, Henry C, Khadhraoui N, Courtin G, Blanchard-Gutton N, Guillaud L, Barthélémy I, Gressette M, Solgadi A, Dumont F, Castel J, Ternacle J, Demarquoy J, Malgoyre A, Koulmann N, Derumeaux G, Giraud MF, Blot S, Joubert F, Veksler V, Luquet S, Relaix F, Tiret L, Pilot-Storck F. (2019) Alteration of cardiolipin-dependent mitochondrial coupling in muscle protects against obesity. , ().

Ryskaliyeva A, Henry C, Miranda G, Faye B, Konuspayeva G, Martin P. (2019) Alternative splicing events expand molecular diversity of camel CSN1S2 increasing its ability to generate potentially bioactive peptides. Scientific Reports, 1 (9) 5243.

Ryskaliyeva A, Henry C, Miranda G, Faye B, Konuspayeva G, Martin P. (2019) The main WAP isoform usually found in camel milk arises from the usage of an improbable intron cryptic splice site in the precursor to mRNA in which a GC-AG intron occurs. BMC Genet, 1 (20) 14.

Nozeret K, Boucharlat A, Agou F, Buddelmeijer N. (2019) A sensitive fluorescence-based assay to monitor enzymatic activity of the essential integral membrane protein Apolipoprotein N-acyltransferase (Lnt). Sci Rep. Nov 4;9(1):15978. doi: 10.1038/s41598-019-52106-8. PMID: 31685855.

Gaviard C, Cosette P, Jouenne T, Hardouin J. (2019) LasB and CbpD Virulence Factors of Pseudomonas aeruginosa Carry Multiple Post-Translational Modifications on Their Lysine Residues. J Proteome Res. 18(3): 923-933.

Millar, H.A., Heazlewood, J.L., Giglione, C., Holdsworth, M.J., Bachmair, A., Schulze, W.X., (2019) The scope, functions and Dynamics of Post translational protein Modifications, Annual Review of Plant Biology, 70:119-151.

Candela T, Fagerlund A, Buisson C, Gilois N, Kolsto AB, Okstad OA, Aymerich S, Nielsen-Leroux C, Lereclus D, Gohar M. 2019. CalY is a major virulence factor and a biofilm matrix protein. Mol Microbiol 111:1416-1429.

Buisson C, Gohar M, Huillet E, Nielsen-LeRoux C. 2019. Bacillus thuringiensis Spores and Vegetative Bacteria: Infection Capacity and Role of the Virulence Regulon PlcR Following Intrahaemocoel Injection of Galleria mellonella. Insects 10.

Chiumento S, Roblin C, Kieffer-Jaquinod S, Tachon S, Leprètre C, Basset C, Aditiyarini D, Olleik H, Nicoletti C, Bornet O, Iranzo O, Maresca M, Hardré R, Fons M, Giardina T, Devillard E, Guerlesquin F, Couté Y, Atta M, Perrier J, Lafond M, Duarte V. Ruminococcin C, a Promising Antibiotic Produced by a Human Gut Symbiont. 2019, Sci. Adv., 5, eaaw9969.

Bontemps-Gallo S, Fernandez M, Dewitte A, Raphaël E, Gherardini FC, Elizabeth P, Koch L, Biot F, Reboul A, Sebbane F. Nutrient depletion may trigger the Yersinia pestis OmpR-EnvZ regulatory system to promote flea-borne plague transmission. Mol Microbiol. 2019 Nov;112(5):1471-1482. doi: 10.1111/mmi.14372. .

Gasiorowski E, R Auger, X Tian, S Hicham, C Ecobichon, S Roure, MV Douglass, M Stephen Trent, D Mengin-Lecreulx, T Touzé, IG Boneca. 2019. HupA, the main undecaprenyl pyrophosphate and phosphatidylglycerol phosphate phosphatase in Helicobacter pylori is essential for colonization of the stomach. PLoS Pathog. 15(9):e1007972.

Chareyre S., Barras F. and P. Mandin (2019) A small RNA controls bacterial sensitivity to gentamicin during iron starvation. PLoS Genet : 15 (4 ): e 1008078. Doi 10.1371.